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I wasn't aware of a good reader app, and it required me to use the web view. Unless there is one that I missed?
I run calibre off my desktop. You can enable the Calibre content server and it can serve up your books for download (or provide a web reader).
If you have an Android device, you can use something like Moon Reader (or any other reading app that supports epub or Pdf) to download content from the Calibre content server.
With respect to covers and metadata, Calibre can tag and fill in this info as well - out of the box it will scrape information from Amazon.