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If you're going for a 3.5" HDD, then you'll most likely have to look for a bit bigger form factor than TinyMiniMicro (Lenovo Tiny / HP Mini / Dell Micro series) - these computers can't fit a 3.5" HDD.
If size isn't a major concern, I'd go for the SFF variants of these computers - they are often cheaper than minis for same specs, but probably have a bit larger idle power draw and take up more space. As a bonus upside, you get some small PCIe slots in these computers, so yay for expansions.
I can also buy an adapter and plug the drive in over USB. It would be nicer if it fit inside but it's not that important.
USB is not really a reliable connector for storage purposes. I'd highly recommend against USB.
I have external usb3 and usb-c raid arrays.... You need to buy expensive enclosures, something that cost 100€+ to be safe, then it will work for a long time.
My older usb3 array (4 disks in a jbod) is almost 7 years old and kicking.