this post was submitted on 28 Jul 2023
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Absolutely amazing!! I suppose you've seen some renderings like this one.
However, these molecules don't really have a will or a scope, and in fact I don't like how they are deceivingly represented in some of these animations. These animations show, say, some aminoacid that goes almost straight towards some large molecule and does this and that. And one is left with the question: how does it get there and how does it "know" that it should get there? The answer is that it's just immersed in water and moved about by the unsystematic motion of the water molecules. Some aminoacids go here, some go there. In these animations they only show the ones that end up connecting with the large molecule. OK, this is done just to simplify the visualization, but it can also be misleading.
Similarly with molecules like kinesin, which seem to purposely walk around. Also in that case there's a lot of unsystematic motion, that after a while ends in a particular more stable configuration thanks to electromagnetic forces. Simulations such as this or this give a more realistic picture of these processes.
Don't get me wrong, I'm not saying that the whole thing isn't awe-inspiring or mind blowing. It is. Actually I think that the more realistic picture (without these "purposeful" motions) leads to even more awe, because of the structured complexity that comes out of these unsystematic motions.
Totally agree! That kinesin walking animation has dealt untold damage onto the collective psyche ๐. It just looks sooo cool strutting along on its stroll, with purpose and determination! But the reality is more like the molecular dynamics simulation videos you posted - wacky waving inflatable arm flailing tube men all the way down.
Couldn't think of a better way to put it!!